PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1401s0050.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family E2F/DP
Protein Properties Length: 317aa    MW: 35535.7 Da    PI: 4.2012
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1401s0050.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP85.44.3e-272186171
                 E2F_TDP  1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71
                            r+++sL+llt++f++l++++++gi++ln++a++L   +v  ++RRiYDi+NVLe+++liek+ kn+irwkg
  SapurV1A.1401s0050.2.p 21 RYDSSLGLLTKRFVDLFKNADDGILDLNNAAETL---EV--QKRRIYDITNVLEGIGLIEKTLKNRIRWKG 86
                            6899******************************...99..****************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.109.2E-291888IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.9E-172184IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.7E-342186IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.4E-242386IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF1440745.23E-31102203No hitNo description
CDDcd146602.53E-45103203No hitNo description
PfamPF164212.9E-32103201IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MNIISELADC ASPLTPAGSC RYDSSLGLLT KRFVDLFKNA DDGILDLNNA AETLEVQKRR  60
IYDITNVLEG IGLIEKTLKN RIRWKGIDAS RPRQVEGDAT LSQAEIENLT MEEHKLDDQI  120
REMQERLRDM SEDENNQKWL FVTEEDIKSL PCFLNETLIA IKAPHGTTLE VLDPDEAVDC  180
LQRRYRIILR SSMGPIDVYL VSQFEEMNSV DASAFPHASS SASNGNPVAE MTTGVRTEKR  240
GDPLEQHAQT TFSDPNGTQD LGGMMKIVPS DVNNDSDYWL LSDADISITD MWKTDSNIEW  300
TDFEVADVQT PRTQTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A1e-231687274PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011044035.10.0PREDICTED: transcription factor E2FA-like isoform X2
SwissprotQ9FNY01e-125E2FA_ARATH; Transcription factor E2FA
TrEMBLB9HBQ90.0B9HBQ9_POPTR; E2F TRANSCRIPTION FACTOR-3 family protein
STRINGPOPTR_0006s22150.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36010.11e-123E2F transcription factor 3